Posts Tagged ‘ databases ’

Stop Hosting Data and Code on your Lab Website

January 8, 2013
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Stop Hosting Data and Code on your Lab Website

It's happened to all of us. You read about a new tool, database, webservice, software, or some interesting and useful data, but when you browse to http://instititution.edu/~home/professorX/lab/data, there's no trace of what you were looking for. THE P...

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RegulomeDB: Identify DNA Features and Regulatory Elements in Non-Coding Regions

November 7, 2012
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RegulomeDB: Identify DNA Features and Regulatory Elements in Non-Coding Regions

Many papers have noted the challenges associated with assigning function to non-coding genetic variation, and since the majority of GWAS hits for common traits are non-coding, resources for providing some mechanism for these associations are desperatel...

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Browsing dbGAP Results

June 27, 2012
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Browsing dbGAP Results

Thanks to the excellent work of Lucia Hindorff and colleagues at NHGRI, the GWAS catalog provides a great reference for the cumulative results of GWAS for various phenotypes.  Anyone familiar with GWAS also likely knows about dbGaP – the NCBI ...

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The HaploREG Database for Functional Annotation of SNPs

June 11, 2012
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The HaploREG Database for Functional Annotation of SNPs

The ENCODE project continues to generate massive numbers of data points on how genes are regulated.  This data will be of incredible use for understanding the role of genetic variation, both for altering low-level cellular phenotypes (like gene ...

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A statistician’s view of Stanford’s open Introduction to Databases class

December 22, 2011
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A statistician’s view of Stanford’s open Introduction to Databases class

In addition to the Introduction to Machine Learning class (which I have reviewed), I took a class on introduction to databases, taught by Prof. Jennifer Widom. This class consisted of video lectures, review questions, and exercises. Topics covered incl...

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