Posts Tagged ‘ software ’

INLA functions (yet again)

September 17, 2012
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INLA functions (yet again)

This links back to previous posts here and here. Earlier today, I had a quick chat with Michela (by email, actually) on this topic. In particular, she was trying to use the function I've written to compute summaries from the posterior distrib...

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BCEA examples

September 13, 2012
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BCEA examples

I've prepared a document (which I've put on the website here, together with some scripts at this page) which I think is helpful, if you're trying to work out BCEA. I have never really thought of this, but I believe that when you write an acad...

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INLA functions (continued)

September 10, 2012
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INLA functions (continued)

I have polished up one of the two functions I've thought of implementing for INLA and it's now available in the development version of the R package. So if you've got INLA installed in your R version (see how you can do it here, if you don't), you...

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Near-instant high quality graphs in R

September 5, 2012
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Near-instant high quality graphs in R

One of the main attractions of R (for me) is the ability to produce high quality graphics that look just the way you want them to. The basic plot functions are generally excellent for exploratory work and for getting to know your data. Most packages have additional functions for appropriate exploratory work or for summarizing […]

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Stan

September 3, 2012
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Stan

I don't mean the weirdo that locks his girlfriend in the boot of his car and drives into a river, after having dyed his hair so he looks like that other weirdo Eminem (who, I have to admit, for some reason I kind of liked, back in the days).I...

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Interview with C. Titus Brown – Computational biologist and open access champion

August 17, 2012
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Interview with C. Titus Brown – Computational biologist and open access champion

C. Titus Brown  C. Titus Brown is an assistant professor in the Department of Computer Science and Engineering at Michigan State University. He develops computational software for next generation sequencing and the author of the blog, “Livin...

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The coming commodization of infographics

July 31, 2012
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The coming commodization of infographics

An email lay in my inbox with the tantalizing subject line: "How to Create Good Infographics Quickly and Cheaply?" It's a half-spam from one of the marketing sites that I signed up for long time ago. I clicked on the...

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Pasting Excel data into R on a Mac

June 2, 2012
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Pasting Excel data into R on a Mac

When starting out with R, getting data in and out can be a bit of a pain. It should take long to work out a convenient method – depending on what OS you use and what other packages you work with. In my case I prefer to work with Excel spreadsheets (which are versatile and […]

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Updating to R 2.15, warnings in R and an updated function list for Serious Stats

May 27, 2012
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Updating to R 2.15, warnings in R and an updated function list for Serious Stats

Whilst writing the book  the latest version of R changed several times. Although I started on an earlier version, the bulk of the book was written with 2.11 and it was finished under R 2.12. The final version of the R scripts were therefore run and checked using R 2.12 and, in the main, the most recent […]

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Stepping Outside My Open-Source Comfort Zone: A First Look at Golden Helix SVS

May 16, 2012
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Stepping Outside My Open-Source Comfort Zone: A First Look at Golden Helix SVS

I'm a huge supporter of the Free and Open Source Software movement. I've written more about R than anything else on this blog, all the code I post here is free and open-source, and a while back I invited you to steal this blog under a cc-by-sa license....

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